NEWS

clinspacy 1.0.2.9000

Fixed documentation prior to CRAN submission based on feedback
Bug fix: Specified version numbers for spaCy (2.3.0), scispaCy (0.2.5), and medspaCy (0.1.0.2) to ensure that the versions are compatible with one another
Bug fix: spaCy 2.3.0 must be installed from conda-forge (pip set to FALSE) because the source fails to build properly on Windows even with Visual C++ build tools installed
Update: Switched to using medspaCy instead of its individual components because medspaCy 0.1.0.2 is compatible with spaCy 2.3.0 (an older version was not).
Bug fix: changed section_title to section_category due to updates in medspaCy sectionizer API
Known issue: After first running clinspacy_init() on Windows, sometimes it cannot find numpy. This is a known issue with reticulate https://github.com/rstudio/reticulate/issues/367. Restarting the R session and re-running clinspacy_init() appears to fix the issue

Bug fix: removed unnecessary arguments and some clean up in prep for CRAN submission

Added NA to semantic_types argument for both clinspacy() and clinspacy_single() to prevent tokens from being discarded if they do not match a listed semantic type.
Moved clinspacy_single() logic into lapply() instead of gradually building a list using a for loop for boost in speed
Moved progress bar to clinspacy() so that it iterates over documents rather than tokens

Added a NEWS.md file to track changes to the package.
bind_* functions no longer run clinspacy_init() -- this should speed up load times